List of Publications

• Low-cost production and sealing procedure of mechanical parts of a versatile 3D-printed perfusion chamber for digital holographic microscopy of primary neurons in culture

  Proc. SPIE 10074, Quantitative Phase Imaging III, 100741S (2017)

  Bélanger, E., Lévesque, S.A., Anctil, G., Poulin-Girard, A.-S., Marquet, P.
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• Low-Cost Production of a Versatile 3D-Printed Perfusion Chamber for Quantitative Phase Imaging of Primary Neurons in Culture

  Optics in the Life Sciences Congress, Optical Society of America, JTu4A.17 (2017)

  Bélanger, E., Anctil, G., Poulin-Girard, A.-S., Marquet, P.
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• Automated multi-parameter measurement of cardiomyocytes dynamics with digital holographic microscopy

  Opt Express 23(10):13333-13347 (2015)

  Rappaz, B., Moon, I., Yi, F., Javidi, B., Marquet, P., Turcatti, G.
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• Review of quantitative phase-digital holographic microscopy: promising novel imaging technique to resolve neuronal network activity and identify cellular biomarkers of psychiatric disorders

  Neurophotonics 1(2):020901 (2014)

  Marquet, P., Depeursinge, C., Magistretti, P. J.
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• Review of quantitative phase-digital holographic microscopy: promising novel imaging technique to resolve neuronal network activity and identify cellular biomarkers of psychiatric disorders

  Neurophotonics 1(2):020901 (2014)

  Marquet, P., Depeursinge, C., Magistretti, P. J.
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• High Throughput second harmonic imaging for label-free biological applications

  Opt Express 22(25):31102-31112 (2014)

  Macias-Romero, C., Didier, M., Delannoy, L., Andrea Weiss, A., Nowak-Sliwinska, P., Jourdain, P., Marquet, P., Magistretti, P. J., Dutto, F., Radenovic, A., Roke, S.
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• Effects of hypotonic stress and ouabain on the apparent diffusion coefficient of water at cellular and tissue levels in Aplysia

  NMR Biomed 27(3):280-90 (2014)

  Jelescu, I. O., Ciobanu, L., Geffroy, F., Marquet, P., Le Bihan, D.
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• Digital Holographic Microscopy: A New Imaging Technique to Quantitatively Explore Cell Dynamics with Nanometer Sensitivity

  Multi-Dimensional Imaging, First Edition, John Wiley & Sons (2014)

  Marquet, P., Depeursinge, C.
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• Neural cell dynamics explored with digital holographic microscopy, review article

  Annu Rev Biomed Eng 15:407-431 (2013)

  Marquet, P., Depeursinge, C., Magistretti, P. J.
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• Automated Quantitative Analysis of 3D Morphology and Mean Corpuscular Hemoglobin in Human RBCs Stored in Different Periods

  Opt Express 21(25):30947-30957 (2013)

  Moon, I., Yi, F., Javidi, B., Lee, Y. H., Boss, D., Marquet, P.
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• Measurement of absolute cell volume and osmotic water membrane permeability by digital holographic microscopy

  J Biomed Opt 18(3):036007 (2013)

  Boss, D., Jourdain, P., Depeursinge, C., Magistretti, P. J., Marquet, P.
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• Marker-free phase nanoscopy

  Nat Photonics 7(2):113-117 (2013)

  Cotte, Y., Toy, F., Jourdain, P., Pavillon, N., Boss, D., Magistretti, P. J., Marquet, P., Depeursinge, C.
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• Automated Segmentation of MultipleRed Blood Cells visualized by Digital Holographic Microscopy

  J Biomed Opt 18(2):026006 (2013)

  Yi, F., Moon, I., Javidi, B., Boss, D., Marquet, P.
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• Label-free cytotoxicity screening assay by digital holographic microscopy

  Assay Drug Dev Techn 11(2):101-107 (2013)

  Kühn, J., Shaffer, E., Mena, J., Breton, B., Parent, J., Rappaz, B., Chambon, M., Emery, Y., Magistretti, P., Depeursinge, C., Marquet, P., Turcatti, G.
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• Simultaneous Optical Recording in Multiple Cells by Digital Holographic Microscopy of Chloride Current Associated to Activation of the Ligand-Gated Chloride Channel GABAA Receptor

  PLoS ONE 7(12) (2012)

  Jourdain, P., Boss, D., Rappaz, B., Moratal, C., Hernandez, M. C., Depeursinge, C., Magistretti, P. J., Marquet, P.
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• Automated statistical quantification of three-dimensional morphology and mean corpuscular hemoglobin of multiple red blood cells

  Opt Express 20(9):10295-10309 (2012)

  Moon, I., Javidi, B., Yi, F., Boss, D., Marquet, P.
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• Early cell death detection with digital holographic microscopy

  PLoS ONE 7(1) (2012)

  Pavillon, N., Kühn, J., Moratal, C., Jourdain, P., Depeursinge, C., Magistretti, P. J., Marquet, P.
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• Measuring biophysical parameters of living cells with digital holographic microscopy

  Biomedical Optical Phase Microscopy and Nanoscopy, First Edition, Academic Press (2012)

  Rappaz, B., Depeursinge, C., Marquet, P.
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• Quantitative phase restoration by direct inversion using the optical transfer function

  Opt Lett 36(14):2671-2673 (2011)

  Kou, S. S., Waller, L., Barbastathis, G., Marquet, P., Depeursinge, C., Sheppard, C. J. R.
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• Recognition and classification of red blood cells using digital holographic microscopy and data clustering with discriminant analysis

  J Opt Soc Am A 28(6):1204-1210 (2011)

  Liu, R., Dey, D. K., Boss, D., Marquet, P., Javidi, B.
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• Water movements associated with neuronal activity revealed by optical methods: focus on Digital Holographic Microscopy

  Water - The forgotten Biological Molecule, Pan Stanford Publishing (2011)

  Marquet, P., Jourdain, P., Depeursinge, C., Magistretti, P. J.
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• Label-free second-harmonic phase imaging of biological specimen by digital holographic microscopy

  Opt Lett 35(24):4102-4104 (2010)

  Shaffer, E., Moratal, C., Magistretti, P., Marquet, P., Depeursinge, C.
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• Physical interpretation of the phase function related parameter γ studied with a fractal distribution of spherical scatterers

  Opt Express 18(23):23664-23675 (2010)

  Chamot, S., Migacheva, E., Seydoux, O., Marquet, P., Depeursinge, C.
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• Real time, nanometric 3D-tracking of nanoparticles made possible by second harmonic generation digital holographic microscopy

  Opt Express 18(16):17392-17403 (2010)

  Shaffer, E., Marquet, P., Depeursinge, C.
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• Cell morphology and intracellular ionic homeostasis explored with a multimodal approach combining epifluorescence and digital holographic microscopy

  J Biophotonics 3(7):432-436 (2010)

  Pavillo, N., Benke, A., Boss, D., Moratal, C., Kühn, J., Jourdain, P., Depeursinge, C., Magistretti, P. J., Marquet, P.
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• Application of Digital Holographic Microscopy in Biomedicine

  Handbook of Biomedical Optics, CRC Press (2010)

  Depeursinge, C., Marquet, P., Pavillon, N., Boad, D. A.
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• Noninvasive characterization of the fission yeast cell cycle by monitoring dry mass with digital holographic microscopy

  J Biomed Opt 14(3):034049 (2009)

  Rappaz, B., Cano, E., Colomb, T., Kühn, J., Depeursinge, C., Simanis, V., Magistretti, P. J., Marquet, P.
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• Spatial analysis of erythrocyte membrane fluctuations by digital holographic microscopy

  Blood Cell Mol Dis 42(3):228-232 (2009)

  Rappaz, B., Barbul, A., Hoffmann, A., Boss, D., Korenstein, R., Depeursinge, C., Magistretti, P. J., Marquet, P.
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• Submicrometer tomography of cells by multiple-wavelength digital holographic microscopy in reflection

  Opt Lett 34(5):653-655 (2009)

  Kühn, J., Montfort, F., Colomb, T., Rappaz, B., Moratal, C., Pavillon, N., Marquet, P., Depeursinge, C.
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• Comparative study of human erythrocytes by digital holographic microscopy, confocal microscopy, and impedance volume analyzer

  Cytom Part A 73(10):895-903 (2008)

  Rappaz, B., Barbul, A., Emery, Y., Korenstein, R., Depeursinge, C., Magistretti, P. J., Marquet, P.
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• Simultaneous cell morphometry and refractive index measurement with dual-wavelength digital holographic microscopy and dye-enhanced dispersion of perfusion medium

  Opt Lett 33(7):744-746 (2008)

  Rappaz, B., Charrière, F., Depeursinge, C., Magistretti, P. J., Marquet, P.
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• Axial sub-nanometer accuracy in digital holographic microscopy

  Meas Sci Technol 19(7) (2008)

  Kühn, J., Charrière, F., Colomb, T., Cuche, E., Montfort, F., Emery, Y., Marquet, P., Depeursinge, C.
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• Cellular Dynamics Revealed by Digital Holographic Microscopy

  The New Encyclopedia of Neuroscience, First Edition, Elsevier (2008)

  Marquet, P., Depeursinge, C.
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• Amplitude point-spread function measurement of high-NA microscope objectives by digital holographic microscopy

  Opt Lett 32(16):2456-2458 (2007)

  Charrière, F., Marian, A., Colomb, T., Marquet, P., Depeursinge, C.
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• Influence of shot noise on phase measurement accuracy in digital holographic microscopy

  Opt Express 15(14):8818-8831 (2007)

  Charrièr, F., Rappaz, B., Kühn, J., Colomb, T., Marquet, P., Depeursinge, C.
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• Real-time dual-wavelength digital holographic microscopy with a single hologram acquisition

  Opt Express 15(12):7231-7242 (2007)

  Kuhn, J., Colomb, T., Montfort, F., Charrière, F., Emery, Y., Cuche, E., Marquet, P., Depeursinge, C.
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• On the complex three-dimensional amplitude point spread function of lenses and microscope objectives: Theoretical aspects, simulations and measurements by digital holography

  J Microsc 225(2):156-169 (2007)

  Marian, A., Charrière, F., Colomb, T., Montfort, F., Kühn, J., Marquet, P., Depeursinge, C.
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• Numerical parametric lens for shifting, magnification, and complete aberration compensation in digital holographic microscopy

  J Opt Soc Am A 23(12):3177-3190 (2006)

  Colomb, T., Montfort, F., Kühn, J., Aspert, N., Cuche, E., Marian, A., Charrière, F., Bourquin, S., Marquet, P., Depeursinge, C.
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• Submicrometer optical tomography by multiple-wavelength digital holographic microscopy

  Appl Optics 45(32):8209-8217 (2006)

  Montfor, F., Colomb, T., Charrière, F., Kühn, J., Marquet, P., Cuche, E., Herminjard, S., Depeursinge, C.
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• Purely numerical compensation for microscope objective phase curvature in digital holographic microscopy: Influence of digital phase mask position

  J Opt Soc Am A 23(11):2944-2953 (2006)

  Montfort, F., Charrière, F., Colomb, T., Cuche, E., Marquet, P., Depeursinge, C.
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• Shot-noise influence on the reconstructed phase image signal-to-noise ratio in digital holographic microscopy

  Appl Optics 45(29):7667-7673 (2006)

  Charrière, F., Colomb, T., Montfort, F., Cuche, E., Marquet, P., Depeursinge, C.
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• Living specimen tomography by digital holographic microscopy: Morphometry of testate amoeba

  Opt Express 14(16):7005-7013 (2006)

  Charrière, F., Pavillon, N., Colomb, T., Depeursinge, C., Heger, T. J., Mitchell, E. A. D., Marquet, P., Rappaz, B.
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• Total aberrations compensation in digital holographic microscopy with a reference conjugated hologram

  Opt Express 14(10):4300-4306 (2006)

  Colomb, T., Kühn, J., Charrière, F., Depeursinge, C., Marquet, P., Aspert, N.
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• Characterization of microlenses by digital holographic microscopy

  Appl Optics 45(5):829-835 (2006)

  Charrière, F., Kühn, J., Colomb, T., Montfort, F., Cuche, E., Emery, Y., Weible, K., Marquet, P., Depeursinge, C.
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• Cell refractive index tomography by digital holographic microscopy

  Opt Lett 31(2):178-180 (2006)

  Charrière, F., Marian, A., Montfort, F., Kuehn, J., Colomb, T., Cuche, E., Marquet, P., Depeursinge, C.
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• Automatic procedure for aberration compensation in digital holographic microscopy and applications to specimen shape compensation

  Appl Optics 45(5):851-863 (2006)

  Colomb, T., Cuche, E., Charrière, F., Kühn, J., Aspert, N., Montfort, F., Marquet, P., Depeursinge, C.
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• Measurement of the integral refractive index and dynamic cell morphometry of living cells with digital holographic microscopy

  Opt Express 13(23):9361-9373 (2005)

  \*Rappaz, B., *Marquet, P., Cuche, E., Emery, Y., Depeursinge, C., Magistretti, P. J.
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• Polarization microscopy by use of digital holography: Application to optical-fiber birefringence measurements

  Appl Optics 44(21):4461-4469 (2005)

  Colomb, T., Dürr, F., Cuche, E., Marquet, P., Limberger, H. G., Salathé, R., Depeursinge, C.
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• Digital holographic microscopy: A noninvasive contrast imaging technique allowing quantitative visualization of living cells with subwavelength axial accuracy

  Opt Lett 30(5):468-470 (2005)

  Marquet, P., Rappaz, B., Magistretti, P. J., Cuche, E., Emery, Y., Colomb, T., Depeursinge, C.
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• Time-domain optical coherence tomography with digital holographic microscopy

  Appl Optics 44(10):1806-1812 (2005)

  Massatsch, P., Charrière, F., Cuche, E., Marquet, P., Depeursinge, C.
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• Jones vector imaging by use of digital holography: Simulation and experimentation

  Opt Commun 231(1-6):137-147 (2004)

  Colomb, T., Cuche, E., Montfort, F., Marquet, P., Depeursinge, C.
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• In vivo endoscopic tissue diagnostics based on spectroscopic absorption, scattering, and phase function properties

  J Biomed Opt 8(3):495-503 (2003)

  Thueler, P., Charvet, I., Bevilacqua, F., Ghislain, M. S., Ory, G., Marquet, P., Meda, P., Vermeulen, B., Depeursinge, C.
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• Digital Holographic Microscopy applied to biological cells observations

  European Miscroscopy Society Year Book, p.46-58 (2003)

  Depeursinge, C., Cuche, E., Colomb, T., Dahlgren, P., Marian, A., Montfort, F., Marquet, P., Magistretti, P. J.
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• Polarization imaging by use of digital holography

  Appl Optics 41(1):27-37 (2002)

  Colomb, T., Dahlgren, P., Beghuin, D., Cuche, E., Marquet, P., Depeursinge, C.
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• Digital Holographic Microscopy in biology and medicine: A new tool to investigate cells and tissues at the submicron level

  IFMBE News (2002)

  Depeursinge, C., Cuche, E., Colomb, T., Dahlgren, P., Marian, A., Montfort, F., Marquet, P., Magistretti, P.
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• Aperture apodization using cubic spline interpolation: Application in digital holographic microscopy

  Opt Commun 182(1-3):59-69 (2000)

  Cuche, E., Marquet, P., Depeursinge, C.
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• Spatial filtering for zero-order and twin-image elimination in digital off-axis holography

  Appl Optics 39(23):4070-4075 (2000)

  Cuche, E., Marquet, P., Depeursinge, C.
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• Simultaneous amplitude-contrast and quantitative phase-contrast microscopy by numerical reconstruction of Fresnel off-axis holograms

  Appl Optics 38(34):6994-7001 (1999)

  Cuche, E., Marquet, P., Depeursinge, C.
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• Role of tissue structure in photon migration through breast tissues

  Appl Optics 36(1):44-51 (1997)

  Bevilacqua, F., Marquet, P., Coquoz, O., Depeursinge, C.
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• Determination of reduced scattering and absorption coefficients by a single charge-coupled-device array measurement, part II: measurements on biological tissues

  Opt Eng 34(7):2064-2069 (1995)

  Bevilacqua, F., Marquet, P., Depeursinge, C., Haller, E. B.
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• Determination of reduced scattering and absorption coefficients by a single charge-coupled-device array measurement, part I: comparison between experiments and simulations

  Opt Eng 34(7):2055-2063 (1995)

  Marquet, P., Bevilacqua, F., Depeursinge, C, Haller, E. B.
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